YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE16822
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPEEGPLM SATAVFVTSI GVISSVITIV MNVYFIKKIE RTRQKMILFF YRLFLDVAYN  60
   61 VLACAYMTFC IVYSFFTDEL HAQQVFILYV GFPLQTAGAM RTIVAVTMSI ERVLKNFFFK 120
  121 KLLNFFQSSK NVSMDKKSYI SHKITTTTLT DTLILRLECA VSTDAIYTPI MFHNYRHLCP 180
  181 SIIILILAIG LAMLENLILY LFCTLNISAI PRDCGVLRCS LDNCYFNYWT TDRSVLFALN 240
  241 FAFSGLLSTR LLLFNKKHNH NAGEEHTKIN HIALIDAANV FLCDFLPTFS NYVNDYPFFS 300
  301 FKVKVLTSFG FITLLFSEHR TLCLYHKAGW QCCRIVFYFQ GFEEEKRPVE CCSNNSDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.96
Transmembrane Helix	12	36	0.90
Cytoplasmic	37	52	0.91
Transmembrane Helix	53	76	0.86
Non-Cytoplasmic	77	84	0.87
Transmembrane Helix	85	105	0.88
Cytoplasmic	106	177	0.95
Transmembrane Helix	178	201	0.85
Non-Cytoplasmic	202	234	0.94
Transmembrane Helix	235	254	0.92
Cytoplasmic	255	358	0.69