YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE16812
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSSSEPRD LDAERDAFIK EWTATSQLLY YTVICVSVVT LPALIFMFIV LRKYKKSNYY  60
   61 HFLCAIMAGN FVLLATIFSN VISDRNVMIF AGIIPGVVVC KLSAFLVNTS SFFVHWAWVA 120
  121 MYVQRFLHVF FPLRSHRAGD KSKEIIGVLF AFSVISQLWT PILITELSVG ADASSGTYCA 180
  181 EDPRIFGEIT LRYLIFFECF MTFFLPLVLT VITDFSVLIM RNPCTSKNAF TLISADEIVH 240
  241 HESTDEKSPL KIVHKSKIML DIRRRNDAIR RCLLLATVTL LLNLPNYSLQ LIDEFYHFRE 300
  301 SEDLADRRRF VRADAIVYII YLLQFPTVPL YMYCLKTDFD RTKL

Type	Start	End	Confidence
Cytoplasmic	1	27	0.50
Transmembrane Helix	28	51	0.93
Non-Cytoplasmic	52	58	0.46
Transmembrane Helix	59	79	0.95
Cytoplasmic	80	86	0.42
Transmembrane Helix	87	107	0.70
Non-Cytoplasmic	108	111	0.59
Transmembrane Helix	112	131	0.71
Cytoplasmic	132	144	0.87
Transmembrane Helix	145	165	0.91
Non-Cytoplasmic	166	193	0.92
Transmembrane Helix	194	217	0.84
Cytoplasmic	218	271	0.93
Transmembrane Helix	272	289	0.74
Non-Cytoplasmic	290	314	0.75
Transmembrane Helix	315	335	0.62
Cytoplasmic	336	344	0.62