YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE16663
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECNDSRLFD TNNNLTYFVI EQFYRFRYLY SNVHPFLSFI LCVLGLAANA IHITVLTRPR  60
   61 MRHSSVHTVL VCIAISDMGT MTSYLMYISR FEFLSDKEGY SYFWALFLKC HAMLSIALHA 120
  121 ITLYLVVLMA FIRLSAMKLT TSRWLDHTRA LTSAIFIALF VFIMCVPTLL AHQIDETTRG 180
  181 VTMNGMYYKY SVGFSTLMMQ NGCSLMKGNL WLTGIFLKAI PCLLLLTFTI ALINRLRENN 240
  241 EKRKILIKEE RAKKRGDFTT YMLLLMVTVF LFTELPQGIM AILNALFTTQ FHQMVYLNLA 300
  301 DVLDLLSLIN CYVAFLVYSF TSSRYRQTLF SLLPLTKISY SGISTRQGTL KSHQHPGAKT 360
  361 LVQRANSVEV ASARSPLVDK AAITRPNSAQ PTDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.96
Transmembrane Helix	33	56	0.89
Cytoplasmic	57	65	0.87
Transmembrane Helix	66	88	0.90
Non-Cytoplasmic	89	109	0.91
Transmembrane Helix	110	132	0.90
Cytoplasmic	133	149	0.88
Transmembrane Helix	150	171	0.92
Non-Cytoplasmic	172	213	0.93
Transmembrane Helix	214	236	0.91
Cytoplasmic	237	257	0.95
Transmembrane Helix	258	280	0.88
Non-Cytoplasmic	281	299	0.83
Transmembrane Helix	300	321	0.87
Cytoplasmic	322	394	0.95