YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ttm-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEIDVSDRR GLVSDDENFA ETFSTEEGDG EGGGGGDFVG RRSILTTHCH YWDENDDDMV  60
   61 ARVERGGSTD SASSREDTGR RAEKVLWAVA ALSAVFIAAE FVGGFWAQSL AIMTDAGHML 120
  121 SDLLSFIISI FAIRCARLPA SKRLSFGYER AEVLGALTSV IILWVLTTVL VVVAIQRIVN 180
  181 NEHEVDADVM LITAGVGVLF NIVMGLVLHF GTGGHGHTHG GHSSHGHAHD GKNVNVRAAL 240
  241 IHVIGDLVQS IGVLIAALII RFTGWTLADP ICTFLFSIIV LFTTVTVMRD IFFVLMEATP 300
  301 SHYDLSDVKK ALSALEGVKG VHDLHLWSIG MDKTAFSVHL ALESPNRAME NVAEARSLIR 360
  361 RRFGVAVATV QVEPFDEKID SCDTCQQQET A

Type	Start	End	Confidence
Cytoplasmic	1	84	0.99
Transmembrane Helix	85	107	0.92
Non-Cytoplasmic	108	115	0.82
Transmembrane Helix	116	136	0.89
Cytoplasmic	137	152	0.91
Transmembrane Helix	153	175	0.91
Non-Cytoplasmic	176	189	0.84
Transmembrane Helix	190	213	0.87
Cytoplasmic	214	237	0.91
Transmembrane Helix	238	260	0.88
Non-Cytoplasmic	261	266	0.70
Transmembrane Helix	267	288	0.86
Cytoplasmic	289	391	0.96