YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sfxn-1.3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLVINQKI LPDISKSKWD LDTYSGRVKH YFASANPMTL FTSSNTQEMC RKIVVDYKKG  60
   61 IINPELTMDE LWSAKILYDS VYHPDTGEKM FCLGRMSAQT PANMVITGML LSCYRTCPGI 120
  121 IFSHWINQSF NAIVNYTNRS GNCRTTNQQL LYSYFCATGA ATTAALGLNM MVKNSHGLAG 180
  181 RLVPFVAVAV ANAINIPMVR ANELSEGIEL CDEDDHLVAK SKQLAALAIA QVTLSRILMA 240
  241 MPDMVLSPVI MNRFTRTAYY KARPLVQKYS EMPIQTFLAG IGLYFMTPLG CALFPQRSAI 300
  301 HVRKLEVDVQ NQILERKDSP RIVYYNKGL

Type	Start	End	Confidence
Cytoplasmic	1	104	0.85
Transmembrane Helix	105	126	0.57
Non-Cytoplasmic	127	149	0.73
Transmembrane Helix	150	172	0.80
Cytoplasmic	173	177	0.65
Transmembrane Helix	178	199	0.67
Non-Cytoplasmic	200	273	0.54
Transmembrane Helix	274	294	0.84
Cytoplasmic	295	329	0.68