YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fat-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQIKVDAII SKQFLAADLN EIRQMQEESK KQVIKMEIVW KNVALFVALH IGALVGLYQL  60
   61 VFQAKWATVG WVFLLHTLGS MGVTGGAHRL WAHRAYKATL SWRVFLMLIN SIAFQNDIID 120
  121 WARDHRCHHK WTDTDADPHS TNRGMFFAHM GWLLVKKHDQ LKIQGGKLDL SDLYEDPVLM 180
  181 FQRKNYLPLV GIFCFALPTF IPVVLWGESA FIAFYTAALF RYCFTLHATW CINSVSHWVG 240
  241 WQPYDHQASS VDNLWTSIAA VGEGGHNYHH TFPQDYRTSE HAEFLNWTRV LIDFGASIGM 300
  301 VYDRKTTPEE VIQRQCKKFG CETEREKMLH KLG

Type	Start	End	Confidence
Cytoplasmic	1	37	0.99
Transmembrane Helix	38	61	0.89
Non-Cytoplasmic	62	68	0.82
Transmembrane Helix	69	92	0.87
Cytoplasmic	93	185	0.80
Transmembrane Helix	186	206	0.91
Non-Cytoplasmic	207	211	0.59
Transmembrane Helix	212	232	0.72
Cytoplasmic	233	333	0.75