YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aph-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYLLTIACY IASFSPSIAL FCSFIAHDPV RIILFFLGSF FWLVSLLFSS LAWLGLSTVL  60
   61 PDTFLLSLTV CIIAQELSRV AYFMLLKKAQ RGLNKITRQG QISVAPGVSD LHNARHMLAL 120
  121 VCGLGMGVIS ALFYTMNAFA IFSGPGTIGL PNALKTGEID TNRAGKYLPL CYTLSAILLT 180
  181 LFHVTWTIMV WDSCHKIGRI PSAFVPGAAA VVSHLLVTFL SSLNSRGFHV LVFAVQFLIL 240
  241 LICIAYCNVI MGGTISSFVN GIGQSITDAV TLKQVRTLIE ERKLRTQRQS VPDEPMTERA 300
  301 GTSNTVNA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.83
Transmembrane Helix	6	26	0.90
Cytoplasmic	27	32	0.84
Transmembrane Helix	33	56	0.91
Non-Cytoplasmic	57	62	0.84
Transmembrane Helix	63	83	0.89
Cytoplasmic	84	117	0.91
Transmembrane Helix	118	141	0.87
Non-Cytoplasmic	142	169	0.85
Transmembrane Helix	170	190	0.90
Cytoplasmic	191	199	0.77
Transmembrane Helix	200	220	0.90
Non-Cytoplasmic	221	229	0.68
Transmembrane Helix	230	250	0.90
Cytoplasmic	251	308	0.88