YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dhs-8
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSTTNTVS PEDDINRCEE TIRKGMTMGR SIKGSGGYIL ISSDPLFGLL FLQLSKTKMS  60
   61 QANRVRLFHS RTHAFEVLKG IDVSGKTFAI TGTTSGIGIN TAEVLALAGA HVVLMNRNLH 120
  121 ESENQKKRIL EKKPSAKVDI IFCDLSDLKT VRKAGEDYLA KNWPIHGLIL NAGVFRPAAA 180
  181 KTKDGFESHY GVNVVAHFTL LRILLPVVRR SAPSRVVFLS STLSSKHGFK KSMGISEKMS 240
  241 ILQGEDSSAS TLQMYGASKM ADMLIAFKLH RDEYKNGIST YSVHPGSGVR TDIFRNSLLG 300
  301 KFIGFVTTPF TKNASQGAAT TVYCATHPEV EKISGKYWES CWDNDKIDKK TARDEELQEA 360
  361 LWKKLEQIDD RINGSIDTF

Type	Start	End	Confidence
Cytoplasmic	1	33	0.51
Transmembrane Helix	34	52	0.51
Non-Cytoplasmic	53	379	0.89