YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE16251
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	42	0.86
Non-Cytoplasmic	43	59	0.82
Transmembrane Helix	60	79	0.89
Cytoplasmic	80	89	0.83
Transmembrane Helix	90	109	0.91
Non-Cytoplasmic	110	118	0.71
Transmembrane Helix	119	140	0.86
Cytoplasmic	141	155	0.84
Transmembrane Helix	156	179	0.90
Non-Cytoplasmic	180	185	0.79
Transmembrane Helix	186	206	0.93
Cytoplasmic	207	255	0.96
Transmembrane Helix	256	275	0.88
Non-Cytoplasmic	276	291	0.84
Transmembrane Helix	292	314	0.87
Cytoplasmic	315	333	0.84
Transmembrane Helix	334	361	0.86
Non-Cytoplasmic	362	384	0.79
Transmembrane Helix	385	407	0.91
Cytoplasmic	408	416	0.75
Transmembrane Helix	417	439	0.91
Non-Cytoplasmic	440	445	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRPGEYEP PLGKIWTRAE SRMWTITMFS GTCVLYASRA SLPISAAAVA KEFAWNKTDS  60
   61 GTVLSCFFWG YALTQVFAGR IADKYGAEKI LPYSSLAWTM LTFFTPHLFD FAYWTNYPLV 120
  121 VLLAVRILTG VCQAFHIPSL ASIVSKHLAA ADKGRVFGIV LAGSHWGTVL AGAIGSILIE 180
  181 WIGWRALFQF VGIISLIWCW VFRWVLDRAK GPGGRSSPLP DEEVLLDKKH DTIESHLAAT 240
  241 SPCPSVPWGT LFRHPAFWAA AVAQYTGGNS YSILFNWLPS YFHETFPTAK GFVYNVVPSL 300
  301 AIVVTSLVAP VMASRALSEG KTVTYTRKLM EGASLLGIAF CLMLVPMTSS FWISLIIFTM 360
  361 AMAARGLHHG GVSVNPHDFA PNHAGSVFGV FNACGAITGF VGVYIAGHIL EATNNNWSYV 420
  421 FVVTAAQCVV GAMVYTLLGT GQKII