YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srz-31
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTAKVLENV KAMGVLRLFV TVSFYGILIT GFFLNLLIFP FYMYVYKKNK ENDGTTPLSP  60
   61 VTNHFYKMVR TVYALPMCSI VIYILKTFIA VENPVIGDLL MDIIYVFLYI MYLIIQVYHL 120
  121 LIFLLAVGRF LLYFFPKTKE TVLSAQNILQ RKVKYIYALF IVKDFIFLLC LEIGNSIGSK 180
  181 RRVELAKNCY AAIFFSINLL IIISAILYIP IVRSVGKLAI VLSAKQSKPQ KYILWQTMIV 240
  241 FIFKMVTSFV FIDFFLDKAA VTFELIPYII LTDIVITPLI IQISYLGFNK RNIGILLSTL 300
  301 KILPFSNCLA RKTSTVHPMR RVIQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.47
Transmembrane Helix	15	45	0.72
Cytoplasmic	46	68	0.45
Transmembrane Helix	69	90	0.72
Non-Cytoplasmic	91	107	0.56
Transmembrane Helix	108	133	0.81
Cytoplasmic	134	154	0.70
Transmembrane Helix	155	175	0.76
Non-Cytoplasmic	176	189	0.78
Transmembrane Helix	190	212	0.93
Cytoplasmic	213	231	0.84
Transmembrane Helix	232	255	0.90
Non-Cytoplasmic	256	264	0.77
Transmembrane Helix	265	288	0.85
Cytoplasmic	289	324	0.86