YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mtx-1
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELHIWPSDF GLPTIDVVSL QFLACSKMCA SPVRVIQSTR PWRSPSGELP MVAQTEGEAK  60
   61 PVTDFEKFVD ILKKCGQDVV IDADLTTIEK AQLDAFSCYL HHNLYPAVMH TFWTDELNYN 120
  121 TVTQYWYASH LHFPYNLYYL EKRRKKALRL LAGKNDTEIL KEAFMALNTL STKLGDNKFF 180
  181 CGNKPTSLDA LVFGYLAPLL RVPLPNDRLQ VQLSACPNLV RFVETVSSIY LPLGEDELKR 240
  241 QQANRKMWQS RISKAKADKE AAKTTEEASE SLPEEPPMRD AILFTLGALT LSLVFAIHTG 300
  301 LIQVSVEEEI SE

Type	Start	End	Confidence
Cytoplasmic	1	280	0.57
Transmembrane Helix	281	302	0.83
Non-Cytoplasmic	303	312	0.66