YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cdr-1
Protein type:	Globular with Signal Peptide
Type Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDSCLIITA ALFGAAVIYL KNFFTVPSIK PKPDIHKKDY KKDVVYLYQM KRLKNCPNLS  60
   61 PFCMKIEILC RIFKIPYEII TCTSERSRNG LVPFVELNGE HIADSDLIEM RLRSHFKIPS 120
  121 LPTELETQSV ALSKFADHHL FFVLIRFKIA VDEFYKTIIE IIGLPTFLNF LLMPLLKAII 180
  181 GKNVYNKCQG AIGDFELSEL DEILHRDLRI VENTLAKKKF LFGEEITAAD ATVFSQLATV 240
  241 YYPFRNHISD VLEKDFPKLL EYCERVRHEV YPKDFTM

Type	Start	End	Confidence
Signal Peptide	1	16	0.65
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	277	0.90