YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE15854
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWFGFGGNP TDTPSSSAEV SAAPIDLSAG MNFSVPGFDA PAPEPSVPDH SPFPAAPVLA  60
   61 LDQLKSAGVG VSRQMTPYVQ MDPSMFASQQ PQYIMPEGGV AGKGKFEFAL GHIGWAVGGA 120
  121 FGVGCARGAL GELMNPETRK MVGKPWMTRM VNATMKHGSG FAQPSGAIVF MYSALEIGLR 180
  181 SVRAEDELNG FGAGALTGAI YRSPHGLKAS GVGALVGLGI AAAWTLSSTD SRQRLSEMFS 240
  241 NH

Type	Start	End	Confidence
Cytoplasmic	1	107	0.72
Transmembrane Helix	108	131	0.73
Non-Cytoplasmic	132	156	0.57
Transmembrane Helix	157	175	0.62
Cytoplasmic	176	205	0.49
Transmembrane Helix	206	227	0.87
Non-Cytoplasmic	228	242	0.50