YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cyp-13A11
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIILLFVVSS VVGIVSYYFW TWTYWRRCGI PGPQGYPFLG SALDMMDHEN PPFLQLKKWT  60
   61 SQYGKVYGIT EGLLRTLVIS DTNLIHEVFV KQYDNFYGRN LNPIQGDPNR EKRVTLFSAQ 120
  121 GHRWKRLRTI ANPTFSSNNL RKIQVTVEDS ALELLRHIEQ HTAGGKAIDV LEYFQEFTMD 180
  181 VIGRIAMGQP DSLMFKNPLL PCARDVFGKP RTALFLSGIL FPWIGPMIRK VVFYFTNVFN 240
  241 NPAAQIMYQT ANAVEQRIKQ RMAEEKAGID PGEPQDFIDL FLDAKSDDME LENNEDFTKA 300
  301 GVKVTRQLTK DEVVGQCFVF LIAGFDTTAL SLSYSSFLLA THPKAQKKLQ EEIDRECADP 360
  361 EVTFDQLSKL KYMECVIKET LRMYPLGALA NSRRCMRSTK IGNYEIEKGV DILCDTWTLH 420
  421 YDKSIWGEDA EEFKPERWES GDEHFYQKGG YIPFGLGPRQ CIGMRLAYME EKLLLSHILR 480
  481 KYTLEVCNKT QIPLKLIGSR TTQPESVWLN LTPRDDN

Type	Start	End	Confidence
Cytoplasmic	1	4	0.27
Transmembrane Helix	5	24	0.47
Non-Cytoplasmic	25	517	0.83