YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	stdh-2
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIQWFATGV GAAVVLYIFY HFIRIILNIL VPYAFCQPID LKKKAGASWA VVTGATDGIG  60
   61 KSYSFELARR GFNVYIVSRT QSKLEQTKKD ILEKQPDIEV RFATYDFTNP SVTDYEKLLS 120
  121 KLNEVSVGIL INNVGMFFDY PEMLHKINGG IDSIANVIII NTLPATLLSA GILPQMVSRK 180
  181 AGIIVNIGSF AGVVKLAEWS IYSATKKYVE WLTGCLRKEY SHHGIIFQAI TPAMVATKMA 240
  241 GNPNTSFFCP DSDTFARSAL NTIGHASETT GYIAHQIQCE ILKLLPDFVI DRSIKKGNAE 300
  301 FREKALAKSE NKPLA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.69
Transmembrane Helix	6	27	0.70
Cytoplasmic	28	152	0.63
Transmembrane Helix	153	173	0.52
Non-Cytoplasmic	174	181	0.58
Transmembrane Helix	182	199	0.36
Cytoplasmic	200	315	0.51