YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cav-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRQNTSESD NTQRPPIPQY DTVDDIDELT DAMDKEDHHH HHHHHEHHHQ HQGIAQYDTV  60
   61 EEVETLETVH HRTSLNQEVP TPQRRSHPQY DNLDDIDDQE YITEVEVKSN RGSTLTTRPH 120
  121 VTIKQDEIED IGERQVTVIE IASQKGSTKR VAPRKDYAPS IPLPEHPAQQ SAPPTQQSRP 180
  181 QTTSHKPPNP EMEFDIGVKN IAPVLIHKMN MDDRDPKDSA QYLNTSFFEV FNEPSEQYHS 240
  241 IACVWTLSFK IFEIVRIYSY KILTLIFGLI IAFLGGILFA LFAFLNIWIF RPILILTRMA 300
  301 FAQIVLIWPM FLIYIVRPFF YSVGAIFSTA RLHTSRGEQV VEVWEKHIHH V

Type	Start	End	Confidence
Cytoplasmic	1	261	0.57
Transmembrane Helix	262	285	0.89
Non-Cytoplasmic	286	298	0.51
Transmembrane Helix	299	321	0.80
Cytoplasmic	322	351	0.66