YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tag-141
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSEGPVMFD TVLYGVISVT VVSLLSLGGA CIGPLMTKDA KHRWLHFFLA MAVSTLSSDA  60
   61 ILHIIPQVVG VHDHGHNHGH SHEHHHEHTD LENGTSGHGH SHHHDDSDRI MWYTVTPARK 120
  121 NLLRLSVIVL SIYILYFVEF FMFYRKTHLH YCSPSTKSPV ITSSVSTHSD IKSSASNHSI 180
  181 TGSEEDNNND SSKKERRNSV ELEKRREQGG HELISLREDG DDDGTEICGL KPRALIILFG 240
  241 DGVHNLVDGL AMGASFMISV KLGFITTIAV ICHELPHEIG DLAVLIDSGL SMCTALILNL 300
  301 LSALTAYAGL FIAIVLGRDE EIETILLAIT AGMFLYVAWV DMASLNTLIV FNNLYYSFHI 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.94
Transmembrane Helix	12	35	0.90
Cytoplasmic	36	43	0.89
Transmembrane Helix	44	65	0.93
Non-Cytoplasmic	66	121	0.95
Transmembrane Helix	122	143	0.91
Cytoplasmic	144	251	0.94
Transmembrane Helix	252	273	0.71
Non-Cytoplasmic	274	292	0.76
Transmembrane Helix	293	316	0.89
Cytoplasmic	317	324	0.81
Transmembrane Helix	325	345	0.88
Non-Cytoplasmic	346	360	0.78