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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: catp-4
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCQPPPPPLR PFSQKTKIIN NQSVIASIRK SSFIMFGCFK KKKTNKSLED LKKDVVIDDH  60
   61 EIPLDALFKR YTTSEKNGIS EAEATNRLNR DGPNALTPPK QTSKWIKLAG SIFGGFNFLL 120
  121 WCAASASAVG YGMDLSMSDD EEVPKDNMYM AIILATVVTV TGLFDFYQNR KSGNLMDSFA 180
  181 NMIPPKTLVV RDGATREIEV KDLVVGDLVR FRGGDRVPAD LRVTLARGLK VDNSSLTGES 240
  241 EPQTRNMNCT SKNALETKNL CMFSTSVLEG SGEGIIIGTG DRTFVGRIAA LTTQVDPGPT 300
  301 PLAKEINHFI KIISIVAFTV GIAFFILALV YEYPPLKAIV FFMGIVVANV PEGIVPTVTV 360
  361 SLTLTAVKMR KKFCLVKKLQ AVETLGSTST ICSDKTGTLT QNRMTVTHLW FDGKIKDTEI 420
  421 LPPNDHFKGE KKYEKEDSYQ KLLRCATLCS RSHFRVPEFD VPLAKRVVNG DASEVAIMRY 480
  481 CEMIRGDGQV DEFRKIMPKI GEIPFNSTNK YQLSIHPMSK KQNILVMKGA PEKILKLCST 540
  541 YYQNGETKNV SKKFEKEFQQ AYETLGSYGE RVLGFCDLEM STTKFPPGFK FNMEEPNFPI 600
  601 KNLRFLGLIS MIDPPRPGVP EAVRVCQNAG IRVVMVTGDH PITARAIANQ VHIIEENVQV 660
  661 TEIVNADPKC DPASDEIYGK GRLKPTGAVV IHGEQLTTMS PKTLKAVVTN YHQIVFARTS 720
  721 PAQKLQIVEA FQSVGNIVGV TGDGVNDAPA LRKADIGIAM GITGTDVSKQ AADMILLNDN 780
  781 FASIVTGVEE GRLIFDNLKK SIAYTLTSNI PEITPFMSYV LFGLPLPMSI IAILMIDLGT 840
  841 DLWPAISFAY EVPESDIMQR APRNPLYDKL VNKRLVMFSY MQIGAIQACA GFTTYFVLMM 900
  901 SNGWFPQDLL NISEQWDNKY IDDLEDSYGQ QWSYESRKAL ESCCYGTFFF TIVVTQWSDL 960
  961 FASKTRKNSL VMQGMENHVL NTSVIFTCFL AIFVLNTPFV NEVLGVQGFR LEIGFLALPF1020
 1021 AFFIGLYDEV RRYFIRTYPG GYIYKETYY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle