YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE15435
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICKFSAFLV NSASCFIHWT WVGMYSQRFL HVFFPLRSRR RLPRSTWNTL LIILLISCTC  60
   61 QIWAPITITE LSFSPGNNSQ GTYCAEDPYF SSSSKIIVLV ESTITFFIPF MLTVLADISV 120
  121 LVSKVPWQTP FKLISADDLR NNNRSDNMKI VSKLNLEVNG YQILKILKFW SQFRLKSAEK 180
  181 RRINAIKRCL ISATLTLVLN LPNYVLQVVD EFYSLREHGN ISIRRVFLQA DAAVYILYLL 240
  241 QFPLVPVNMY FLRQNITRSS RFVFL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.68
Transmembrane Helix	7	25	0.64
Cytoplasmic	26	45	0.85
Transmembrane Helix	46	67	0.93
Non-Cytoplasmic	68	97	0.94
Transmembrane Helix	98	122	0.80
Cytoplasmic	123	183	0.97
Transmembrane Helix	184	206	0.76
Non-Cytoplasmic	207	231	0.81
Transmembrane Helix	232	252	0.87
Cytoplasmic	253	265	0.84