YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVIQNLLSA VSPQPDGDFV DKLNYCATTI GLVLASAFIT GWSFVGSPID CWFPAYYKGW  60
   61 WAEYALDYCY VQNTFFVPFS EDKAERSYNW EQLVADKQNT TSLKQTNQIG YYQWVPFILA 120
  121 LQAMLFYFPV VIWRLFYGMA GQNVTSLCNT CTATEGNEES RKGTITTIAG YISQKRHRNL 180
  181 IVKQLSGFQN RANGSAVITS YLFMKALFLI NVLFQFVLLK RMLGVDSYFW GAEVTSDLWS 240
  241 GNEWPETGNF PRVTMCEYEV RNLDNIHKHS VQCVLMINMF NEKIFVALWW WLCFLTVVTI 300
  301 TNTIYWFWRA SGTSVSKNFI RPYVEDIDPK VKNNRGKLQQ FVSEFLSPDT VFILRLIELN 360
  361 NGKTPVVELI RDMWRRFNTA VPPPYSAPPL LVKDGAPLLK NFQDESEM

Type	Start	End	Confidence
Cytoplasmic	1	24	0.88
Transmembrane Helix	25	46	0.81
Non-Cytoplasmic	47	114	0.83
Transmembrane Helix	115	137	0.86
Cytoplasmic	138	200	0.85
Transmembrane Helix	201	219	0.88
Non-Cytoplasmic	220	285	0.82
Transmembrane Helix	286	308	0.93
Cytoplasmic	309	408	0.84