YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE15082
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTDEQALHM VFLSHENVLS LLFNHGVTGK FLNFQKYIIS FKFPLGRNLK NSIKLLLDIS  60
   61 DSEKNWLYYS VVSLFVVSTI GATILTMSFL VLSILLWRHF KSMRFFWFLT QLTTSAFVIS 120
  121 AANLFINIPA ALSLFSKEVT QSRMFYFVSY IIDFCHYSIL FSNLVIAVQR AFVFFLRNLT 180
  181 DRFFESKVIY IWISSIYIFA FGVEYALMFS NCQYRFGELA RKYQLICETT NYANVVITMT 240
  241 TPTEVQLMET MLQIFLPLSI LIIYIAITVK IIYMKGSTLS KNETLILKQA IFVFLIFQAS 300
  301 SCVFLFAQSV QITNVGAFLV KRFVNTMEIL AGAATPSFFF FTSKEIRKLV STRVSAVSSQ 360
  361 GPSNIQVRAA RTLE

Type	Start	End	Confidence
Cytoplasmic	1	10	0.50
Transmembrane Helix	11	27	0.50
Non-Cytoplasmic	28	73	0.89
Transmembrane Helix	74	97	0.90
Cytoplasmic	98	104	0.91
Transmembrane Helix	105	126	0.90
Non-Cytoplasmic	127	153	0.77
Transmembrane Helix	154	174	0.85
Cytoplasmic	175	187	0.89
Transmembrane Helix	188	208	0.95
Non-Cytoplasmic	209	251	0.95
Transmembrane Helix	252	273	0.92
Cytoplasmic	274	289	0.81
Transmembrane Helix	290	308	0.95
Non-Cytoplasmic	309	322	0.79
Transmembrane Helix	323	343	0.82
Cytoplasmic	344	374	0.89