YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE14954
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.98
Transmembrane Helix	33	54	0.95
Non-Cytoplasmic	55	75	0.92
Transmembrane Helix	76	97	0.88
Cytoplasmic	98	114	0.87
Transmembrane Helix	115	135	0.90
Non-Cytoplasmic	136	142	0.80
Transmembrane Helix	143	165	0.94
Cytoplasmic	166	172	0.91
Transmembrane Helix	173	193	0.93
Non-Cytoplasmic	194	241	0.76
Transmembrane Helix	242	263	0.88
Cytoplasmic	264	282	0.71
Transmembrane Helix	283	304	0.77
Non-Cytoplasmic	305	356	0.75
Transmembrane Helix	357	377	0.83
Cytoplasmic	378	409	0.96
Transmembrane Helix	410	430	0.90
Non-Cytoplasmic	431	436	0.67
Transmembrane Helix	437	455	0.92
Cytoplasmic	456	473	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIKFLEFVK PFCGFVPEVS KPERKIQFRE KMLWTAITLF VFLVCCQIPL FGIMSTDSAD  60
   61 PFYWLRVIMA SNRGTLMELG ISPIVTSGLI MQLLAGAKII EVGDTPKDRA LFNGAQKLFG 120
  121 MVITVGQAIV YVMSGLYGEP SEIGAGICLL IVVQLVIAGL IVLLLDELLQ KGYGLGSGIS 180
  181 LFIATNICET IVWKAFSPAT MNTGRGTEFE GAVIALFHLL ATRSDKVRAL REAFYRQNLP 240
  241 NLMNLMATFL VFAVVIYFQG FRVDLPIKSA RYRGQYSSYP IKLFYTSNIP IILQSALVSN 300
  301 LYVISQMLAG KFGGNFFINL LGTWSDNTGY RSYPTGGLCY YLSPPESLGH IFEDPIHCII 360
  361 YIVFMLGSCA FFSKTWIDVS GSSAKDVAKQ LKEQQMVMRG HREKSMIHEL NRYIPTAAAF 420
  421 GGLCIGALSV TADFMGAIGS GTGILLAVTI IYQYFEIFVK EQQEMGGVSA MFF