YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-45
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYDMDIYLM MSWRDARLVN PYDKPILVKE EDILEKIWRP DPFFANAKEA EFHEVTFLNF  60
   61 LMRIFPDGLV LYETRVKIKP SCNLILCKYP HDKQTCDLLI KSFAYPVETV RFEWFTRRKD 120
  121 AIDKNPDVKL PELYIDRYET TTCPNERKSG AFSCLRAVFR LKRDVGFHIA QTYIPTSLAL 180
  181 MFSWVGVWLP EEFMEGRIGV AITVLLTLST ESAGAREHLP SVSYLKAIDL WFGFITGFVF 240
  241 FTLLQTLFVI GFDKRANQLK KWAGRKTADI TEEIREALLQ KATRYHKTGR YLDNFCRVFY 300
  301 PLSFILFLLM YYFVFTEGRQ DDCMNRR

Type	Start	End	Confidence
Cytoplasmic	1	164	0.92
Transmembrane Helix	165	188	0.85
Non-Cytoplasmic	189	229	0.70
Transmembrane Helix	230	252	0.91
Cytoplasmic	253	294	0.72
Transmembrane Helix	295	315	0.89
Non-Cytoplasmic	316	327	0.69