YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE14456
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEILNLSSKF SLSDKPCQKF IFSLFSAVQN SRFKIISFPE IHQKPLPQEE MNSFGNASVD  60
   61 IDMLEQEMAA EQTANLSGNI AGMSAPKSSS NRRGPMQEVD LDAEFDTLEE PVWDTVKRDV 120
  121 LTVGAKFTHV VLPHGDKQQL LRDWDLWGPL FICVGLALLL QHNGGTESAP QFTQVFTITF 180
  181 FGSVIVTANI KLLGGNISFF QSLCVIGYCL LPPFVAAVLC SLFLHGIAFP LRLLITSIGF 240
  241 VWSTYASMGF LAGCQPDKKR LLVIYPVFLF YFVVSWMIIS HS

Type	Start	End	Confidence
Cytoplasmic	1	143	0.98
Transmembrane Helix	144	164	0.88
Non-Cytoplasmic	165	171	0.85
Transmembrane Helix	172	193	0.90
Cytoplasmic	194	203	0.77
Transmembrane Helix	204	225	0.93
Non-Cytoplasmic	226	232	0.68
Transmembrane Helix	233	254	0.91
Cytoplasmic	255	260	0.95
Transmembrane Helix	261	280	0.95
Non-Cytoplasmic	281	282	0.90