YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE13670
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILNLHISE YKNKMTVEYN SFEKKNMSEN KNRGDISDCQ QNLLDSNQFL FEDSFLRTVL  60
   61 VSFFEAYNPL HIYFLVFFTV LDFFCNISFI VVLSQKELRT SGINLTMIMI ALCNFSSVTL 120
  121 NLFDKMLKLL SEETYLRALY NYLENFLNLY VPVMADYLVV QMTFCRVMAL YSNRTLTGKY 180
  181 AVTIPDEYIE NGCIVFRMSL LFYGILFDVE NNWLQTSTKL FQIVPLLLLF IFFLLILCKL 240
  241 NSFKAHRKKT MGKSSSSGIE NSSRLLQVVL IMFFLVKIPS AAVTIFSAVY MIDYYMFVKK 300
  301 WTFQFIEILL TFNASTSFII YCIMSSQFRE IFVRLFVPES VKQRMQSVEI FDSF

Type	Start	End	Confidence
Non-Cytoplasmic	1	69	0.77
Transmembrane Helix	70	93	0.90
Cytoplasmic	94	101	0.69
Transmembrane Helix	102	123	0.88
Non-Cytoplasmic	124	148	0.75
Transmembrane Helix	149	170	0.62
Cytoplasmic	171	187	0.69
Transmembrane Helix	188	207	0.68
Non-Cytoplasmic	208	220	0.87
Transmembrane Helix	221	243	0.91
Cytoplasmic	244	263	0.97
Transmembrane Helix	264	289	0.82
Non-Cytoplasmic	290	302	0.83
Transmembrane Helix	303	324	0.91
Cytoplasmic	325	354	0.95