YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE13668
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASALNCTQF TVPYPEPGTD EVGNSTIPWL ITTVVKAYRP FHYYILTFLV VFAFFANIMI  60
   61 VKVLSHKEMI RSGVNVTMLL IAVCDFGCSI AGLLQLFLRS YSDNYTSYPT AYGQIAVDYL 120
  121 AVAFHASSLY LAVGMAFCRV KSLNIANRNK DLWQSPNYAV RVACALCAPV FLIATFVLFI 180
  181 NAVKNTEEEG IYLDISDLSL LSECLFMKAS LMASGLCFKI APCLLMLVLS LFLLRRIDEG 240
  241 KQSAQNAAAN QKGKKDKIDR SSRFIQFVLV VFLITESPQG VFSILGGFMI LDYINYFQNL 300
  301 SIFMNILAFF NTTTSFIIYS SLSAKFRRIF AQLFLPSQVL EKIYLKRSTV VVHSIAHSSR 360
  361 TV

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.98
Transmembrane Helix	41	64	0.87
Cytoplasmic	65	73	0.90
Transmembrane Helix	74	98	0.88
Non-Cytoplasmic	99	118	0.89
Transmembrane Helix	119	138	0.94
Cytoplasmic	139	157	0.92
Transmembrane Helix	158	180	0.93
Non-Cytoplasmic	181	210	0.93
Transmembrane Helix	211	234	0.87
Cytoplasmic	235	263	0.97
Transmembrane Helix	264	288	0.86
Non-Cytoplasmic	289	299	0.81
Transmembrane Helix	300	322	0.89
Cytoplasmic	323	362	0.97