YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE13666
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDELNCTQF SIPFPNPGTD EANNISLIRF IIFAVEHYRP YHYYLLSSLI VFSFFANILI  60
   61 VIVLSHKEMR HSGINVIMMF IAVSDFGCAV TGLMQLFIRN YSDQYMLFIT AYLQLFVDYL 120
  121 AVVFHASSLF LAAGMALCRV MALNFSNRLK DKWQSPRYAL RVTCAVYITV LTVSTLIVPV 180
  181 NEVKKTDDGE VYIDTSDFSL AYGCLLMKIV LVFVGICFKL IPCTLMLILS ILLLQKMDEG 240
  241 KRSSVPINRN HKKRVDQLDR SSQLIQTILI VFLITEVPQG VFSIIGGIEV IDYLNYYQNL 300
  301 TIFMNVLSFF NTTTSFIIYS SLSAKFRRIF AQTFLPKNLL NMYMVTVAHF SKINF

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.95
Transmembrane Helix	42	64	0.93
Cytoplasmic	65	75	0.81
Transmembrane Helix	76	98	0.93
Non-Cytoplasmic	99	118	0.91
Transmembrane Helix	119	143	0.85
Cytoplasmic	144	157	0.97
Transmembrane Helix	158	179	0.92
Non-Cytoplasmic	180	208	0.86
Transmembrane Helix	209	233	0.85
Cytoplasmic	234	263	0.96
Transmembrane Helix	264	288	0.82
Non-Cytoplasmic	289	299	0.84
Transmembrane Helix	300	322	0.88
Cytoplasmic	323	355	0.78