YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-141
Protein type:	Globular with Signal Peptide
Type Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTSSNTMST STFVSVASAI SGLAVLGCLF TVAMIFNDIN SFYDEKIEEL NEFKGLEQNA  60
   61 WRSMIPSTRP VNAESLLLGR NKRQAQCNCG AQSQGCPAGP PGPPGYPGAQ GEPGLPGIAG 120
  121 QPGSGARVNP QTGRDSFCIT CPAGPPGPAG TPGAPGAPGN AGAPGQDSFG GGPGPAGPTG 180
  181 PTGDAGAPGQ PGHPGSPGNP GRGGQRSRGL PGPSGRPGPQ GPAGGPGQPG QSGGSGTPGQ 240
  241 PGAPGAPGHP GQAGTPGTPG APGNSGAPGG DAAYCPCPAR SAAMAARKRV FKVARSRAAV 300
  301 AKRRVVKRVR VQKA

Type	Start	End	Confidence
Signal Peptide	1	27	0.49
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	314	0.92