YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cav-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEQDIKTE EQIPLTYAAV AAPTVQTEGE AVVAPEEPKP KKNWFTFGKK KAAPTDETNI  60
   61 EEGGAPGDEP VKEKKEKKCW WSRCQKGEGE QKEENIAIGV DLVNRDANSM NNHVQLNFED 120
  121 IFGEADSQHS WDCVWRLNHT VFTAVRLFIY RLVSLLALPF TIIFAIFFGL LASINVFIIV 180
  181 PLGKLLSIPG TLLAKLWNWL IHAIFDPIAS AVGLIFSNFN IRKYGINQET TAPCV

Type	Start	End	Confidence
Cytoplasmic	1	154	0.93
Transmembrane Helix	155	179	0.86
Non-Cytoplasmic	180	198	0.79
Transmembrane Helix	199	219	0.88
Cytoplasmic	220	235	0.86