YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lips-12
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVFNSIVL VALATMVQAD FSEKFRDHFS NLPELLKDLS RKSQLGPAGS FGGGNHVGGA  60
   61 VTKKIPIIIV HGGGNSAGSF EKYRDHFIKQ GYSNETVYAT SWGFPTETIQ QSLEMKCEYV 120
  121 KRIRKLFFLV ASFTGGKVDI VAYGEGAPIA RKAVIGRNCV DTNQDTGNSL RNEVRAFVSV 180
  181 RGQNGGILCD PSGDKRATCL NMDIGLNCGS KFIKDINAIG KHWKEAVHSI HSIVPLLPQK 240
  241 TNCGSDSCGI PYSKVYEYDF NGVEQNVNRV VEILKKL

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	277	0.99