YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lips-11
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILFNSIAL VVLATIVQAE FSDSFRNYFA GQPELLKVLS RNDLFGAIGS FGGGRHVGGT  60
   61 QTRRVPLIIV HGGGLSAQQY IKYKDEFIKR GYSAETVYAT SWGIPAHTYE PNLEMTCEYV 120
  121 KQIRKLIIAV SKFTNNRVNI VAYGTGSPIA RKAVIGGNCV DTNEDLGVPL TASVRAFVSV 180
  181 RDHSSSNSNS KFIFSGQNGG ILCDPSGDKR ATCLNMDIGL NCGSKFIRDI NAIDKRVALF 240
  241 HIDSIVPLLL QKTSCGSDPY TIPYSKVYEY DFNGVEQNVN RVVEILKK

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	288	0.99