YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE13563
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRSWEEIFM ENCGSERLFL LSIASSVALV PLSSLFFSAS VAFYRKRKIF HPMFSFCFFS  60
   61 LLLLYYSSTT FLAIRNITFS FYGENYGKAP RIADHVVINC ERFYMAISYF IPPLIAIGII 120
  121 ERIFATAFSR FYEKSRYWMT LGYALVFACI LVYIEFANRH VMMATIPTRN IQVLFAIICS 180
  181 WSLILLLFIN RSKSKSGRAK SALSERYQVN ENLKALRIHI PVVCVDTGIQ IMFLCSDIFW 240
  241 NTAQVLNLNY CYDDNIYLHK FVVFRLIGFI LQYFIPFIIL HRFSQMCCNS LRRRPVRRSH 300
  301 PISPSPGTSP SSVVTIQNVF GMTLSGEANG PAGQEAHFKN LYAQWN

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.96
Transmembrane Helix	18	41	0.89
Cytoplasmic	42	52	0.74
Transmembrane Helix	53	74	0.89
Non-Cytoplasmic	75	104	0.92
Transmembrane Helix	105	125	0.90
Cytoplasmic	126	136	0.85
Transmembrane Helix	137	157	0.93
Non-Cytoplasmic	158	170	0.87
Transmembrane Helix	171	190	0.95
Cytoplasmic	191	217	0.93
Transmembrane Helix	218	240	0.78
Non-Cytoplasmic	241	260	0.84
Transmembrane Helix	261	284	0.84
Cytoplasmic	285	346	0.81