YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE13457
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	135	0.91
Transmembrane Helix	136	155	0.75
Non-Cytoplasmic	156	243	0.84
Transmembrane Helix	244	266	0.91
Cytoplasmic	267	275	0.78
Transmembrane Helix	276	296	0.90
Non-Cytoplasmic	297	302	0.75
Transmembrane Helix	303	324	0.87
Cytoplasmic	325	331	0.87
Transmembrane Helix	332	356	0.77
Non-Cytoplasmic	357	420	0.91
Transmembrane Helix	421	443	0.90
Cytoplasmic	444	523	0.92
Transmembrane Helix	524	545	0.88
Non-Cytoplasmic	546	565	0.89
Transmembrane Helix	566	586	0.87
Cytoplasmic	587	648	0.56
Transmembrane Helix	649	669	0.95
Non-Cytoplasmic	670	672	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRREPGRDV KRAAEEEFIE LERRTDTYED AVLNEDPQMK GFRFPSILSF PVPNKTIETG  60
   61 VTDENPFSAR KSAFFTNRLI GREESDSSSS REDSPLGSTE TGESCSTTDD EESKEKRIEY 120
  121 RDSQTQRCLG FCFRQLFFSR MWVFILQFIA SYYAGDRFRT DGFNLVDKLI EPGQSVFGDV 180
  181 VVRRGLMGLR RWDAQQFLFI AEHHYIFEHS LAFFAGFPET VNYVRVGVNN GMESVFGWTF 240
  241 PPWVTITLAA VFVNLFCFLL CGMTLYQVVL IMTRSVKISL LAVSIFAFNP ASIFFSSAYS 300
  301 ESMFFTMTLT GFVFMLFGLR GKGFWHRMLK GFTGTICFGL TFAVRSNGLL NFLYVAWIWC 360
  361 GTLLWDEEMP IPDCHKLIST LAATKNERYK QEWQAKFWRF QQKRKQNRKV FRWTDPNFSR 420
  421 CVTLFIVIVC AISATLLFFT PYVFMTNFTA DEFCKPQDSH KQAVETIAKT VRLSPKTVSV 480
  481 KNAWEKTTWC KKPKLFGIIA RYYGEIQTKY WSVKFFGYWK IKKIPCFLMM LPAAILTVLA 540
  541 IKSSWNDVFL NKRWNNIWVL TARSDHSLPM AIHSSVLLFV AIFYINSEVF TRIIFSSSPF 600
  601 IYIYIATYID KLTQGTIAGN RLWQYFESPG ILPFFVFRRV WQDGWRGKLL YIYILGYFVF 660
  661 GTMAHSAWLP FT