YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE13377
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAFFPVILL TPTPISSAHN LYLFQMLELQ ENITDSQPMD PPSLEIMMLH HLMIILVTLF  60
   61 GNTLLIYVIY KNNAVLRRKR VTPVQMLMLH MCAADILFAL ISVGPTMAIT ATVPFFYGPN 120
  121 LLCKLTKFLQ VIPMYASSFL LVAISADRYQ AICRPLASMK SSIYNRPALY SGIAWTAAIL 180
  181 FSTPQLYLFE KRNGDCSENY TTALQYQLYV CLFNSVVWLL PSAIAGWLYL CVCKAVWKST 240
  241 SFSSSLRNNM KKMEHMKLTE KNGGMQAHHK GATMQCVELD RRRVQTVKLT LTIVAANFVL 300
  301 WAPFCITSVI DAVWPTAINS TFATYIMFFG NLNSCMNPWL WFHFNRKQLK RACPCRKSSE 360
  361 PLIQSLVYVH VMTSEQSDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.68
Transmembrane Helix	48	70	0.94
Cytoplasmic	71	86	0.95
Transmembrane Helix	87	111	0.85
Non-Cytoplasmic	112	127	0.82
Transmembrane Helix	128	149	0.85
Cytoplasmic	150	166	0.84
Transmembrane Helix	167	187	0.86
Non-Cytoplasmic	188	209	0.92
Transmembrane Helix	210	233	0.82
Cytoplasmic	234	288	0.95
Transmembrane Helix	289	310	0.91
Non-Cytoplasmic	311	320	0.75
Transmembrane Helix	321	342	0.92
Cytoplasmic	343	379	0.98