YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acl-8
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVIKGVTFI VLVFFSSLLG TVFLLFPLIP LAWFAPKLWR TCADRLVGFW LTFPCSLIEW  60
   61 VFGVNFRVTG DLIERDEPAI LIMNHRTRLD WLFSWNALYK MDPWLLTTEK ISLKAPLKKI 120
  121 PGAGWAMSSG SYIFLDRNFE NDKPVLERIV KYYSGSEKKY QILLFAEGTD KGERATRLSD 180
  181 AFADKNGLPR YEYVLHPRTT GFKFLMELMK KENYIKYVYD LTIAYSGTIV DTEAKLLAGN 240
  241 FPDKVHLDVK KYKLDEIPTG EGCEKWLTDL WATKEKRLKK FYEQEERLEA SGDRFEWPET 300
  301 TTGIGYYVAF AFWVLASLIW MGAIYSLLWV KVINRFYGDC YSFA

Type	Start	End	Confidence
Cytoplasmic	1	7	0.78
Transmembrane Helix	8	31	0.86
Non-Cytoplasmic	32	45	0.77
Transmembrane Helix	46	66	0.78
Cytoplasmic	67	303	0.78
Transmembrane Helix	304	328	0.87
Non-Cytoplasmic	329	344	0.74