YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MFS4B_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.98
Transmembrane Helix	75	97	0.92
Non-Cytoplasmic	98	117	0.89
Transmembrane Helix	118	137	0.68
Cytoplasmic	138	143	0.48
Transmembrane Helix	144	163	0.81
Non-Cytoplasmic	164	167	0.49
Transmembrane Helix	168	192	0.79
Cytoplasmic	193	204	0.56
Transmembrane Helix	205	226	0.88
Non-Cytoplasmic	227	265	0.76
Transmembrane Helix	266	289	0.93
Cytoplasmic	290	309	0.89
Transmembrane Helix	310	331	0.89
Non-Cytoplasmic	332	349	0.85
Transmembrane Helix	350	372	0.77
Cytoplasmic	373	377	0.60
Transmembrane Helix	378	397	0.88
Non-Cytoplasmic	398	403	0.59
Transmembrane Helix	404	426	0.85
Cytoplasmic	427	436	0.71
Transmembrane Helix	437	459	0.92
Non-Cytoplasmic	460	466	0.70
Transmembrane Helix	467	490	0.89
Cytoplasmic	491	594	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPAEAAPRK KHVRFARMEG DVDHDDQEEN TLFDKQKDVK EGLKSVLKGG KGILSQGSGQ  60
   61 VDVVRPGRSK TGTCWRWLVS LALCASFLGL GMAISVLGPT FEDLAINVNK NISNLSYIFV 120
  121 GRASGYIGGS LLGGILFDFV NPHLLLGFAL LTTAFGMSGT PFCKKAWVLT VLMSSVGVSM 180
  181 GVLDTGGNVL ILNTWGEQAG PHMQALHFSF AAGAFASPII AKLLFGHHNS STNTSLMSGH 240
  241 ASKTIDAVLP FSHPKGTSTI DLPWMWAYIV IGAFVLLVSL LFFSLYFCIS TNSNRTKTAS 300
  301 GKQQFSKHHN TLIILLSMFF FFYVGSEVAY GSFIFTYGKD YVHMEETEAA GLNSLFWGAF 360
  361 AAGRGLAIFF AACLHPGTLI LLSLVGTTVS SLLLCLFSQN YPMLWACTAL YGISMSTTFP 420
  421 SGISWVEQYT TVTGRSAAIF VVGAALGEMV LPALLGFLLG HVQNYPLLMY LTLCTATFTS 480
  481 ILFPVLYKLA SPEGNVTLRK SSGKCTIKDA DDSEYRQALL ENMEEQEENE SEADLCNDAD 540
  541 FEVIEMDDAS LLSSPKSSPP ADVAASVPDV HLVASPLSEP NMLSFSTDSP RSKL