YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srj-45
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEDWIYKYL SRTSCALTFL VNPIFIYLIF SEKSSKFGNY RFLLLYFAFF NFIYSVVNVS  60
   61 VPLDIHNYRY SFFIFVRHGW FMERSDLNFH ILVARCSIVA SSYAVLLSHF IYRYLVISDS 120
  121 SLTRRHFHWY MTGSFLLSVV YFSLWHVTCY FPGRANFELL QYIREDFQET FGLDSTEFNM 180
  181 VGALFSVGSY ETTHRAWIAT ISWSAVSIAS ITSFFVMARL IMRKLKKMTV RTSQKTSRFQ 240
  241 FELLRALIVQ TVIPICISFS PCLLCWYGPI FGIQLDRSFN YFETTALGVF SFVDPIAIIL 300
  301 CLPIFRCRIL KCFSKTYKNN RTTSISRN

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.83
Transmembrane Helix	9	30	0.86
Cytoplasmic	31	41	0.82
Transmembrane Helix	42	63	0.89
Non-Cytoplasmic	64	88	0.89
Transmembrane Helix	89	112	0.88
Cytoplasmic	113	126	0.88
Transmembrane Helix	127	147	0.94
Non-Cytoplasmic	148	198	0.93
Transmembrane Helix	199	222	0.89
Cytoplasmic	223	242	0.98
Transmembrane Helix	243	267	0.87
Non-Cytoplasmic	268	285	0.83
Transmembrane Helix	286	305	0.93
Cytoplasmic	306	328	0.90