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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MDGA1_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVTCLLLLA LIPFHCRGQG VYAPAQAQIV HAGQACVVKE DNISERVYTI RESDTLVLQC  60
   61 LVTGHPRPQV RWTKTAGSAS DKFQETSVFN ETLRIERIAR TQGGRYYCKA ENGVGVPAIK 120
  121 SIRVDVQYLD EPVLTVHQTV SDVRGNFYQE KTVFLRCTVS SNPPARFIWK RGSDTLSHSQ 180
  181 DNGVDIYEPL YTQGETKVLK LKNLRPQDYA SYTCQVSVRN VCGIPDKSIT FQLTNTTAPP 240
  241 TLKLSVNETL VVNPGENVTV QCLLTGGDPL PQLHWSHGPG PLPLGALAQG GTLSIPSVQA 300
  301 RDSGYYNCTA TNNVGNPAKK TVNLLVRSLK NATFQITPDM IKESENIQLG QDLKLSCHVD 360
  361 AVPQEKVNYQ WFKNGKPART SKRLLVTRND PELPAVTSSL ELIDLHFSDY GTYLCVASFP 420
  421 GSPVPDLSVE VNISSETVPP TISVPKGRAV VTVREGSPAE LQCEVRGKPR PPVLWSRVDK 480
  481 EAALLPSGLA LEETPDGKLR VERVSREMSG TYRCQTARYN GFNVRAREAQ VQLTVHFPPE 540
  541 VEPSSQDVRQ ALGRPVLLRC SLLRGSPQRI ASAVWRFKGQ LLPPPPVLPA AAAEGPDHAE 600
  601 LRLDALTRDS SGNYECSVSN DVGSATCLFQ VSAKAYSPEF YFDTPNPTRS HKLSKNYSYV 660
  661 LQWTQREPDA VDPVLNYRLS IRQLNQHNAM VKAIPVRRVE KGQLLEYTLT DLRVPHSYEI 720
  721 HLTPYTTFGA GDMASRVIHY TEPINSPSLS DNTCHFEDEK ICGYTQDLTD NFDWTRQNAL 780
  781 TQNPKRSPNT GPPTDISGTP EGYYMFIETS RPRELGDRAR LVSPLYNASA KFYCVSFFYH 840
  841 MYGKHIGSLN LLVRSRNKGT LDTHAWSLSG NKGNVWQQAH VPINPSGPFQ IIFEGVRGSG 900
  901 YLGDIAIDDV TLKKGECPRR QMDPNKVVVM PGSGAPRLSS LQLWGSMTIF LLALQR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle