YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-53
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.54
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLIFLTVL INFSSCLNIL FYYAVIGPSH IAYLRNTIGK LLARGHNVDV VFAVYNELAN  60
   61 LDLFPDVRRI YYNRHADPDY WKKNANHFSN MFEKSPTPLG EFEIFHESGY QLCKIAINDL 120
  121 KLIEFLKSGK YDIGFSSDYD PCGNILMTAA GIPSIGSLIA TPIFLPHIVS AGLPTVASVY 180
  181 GTSLYPEHDS SLYDKIFNLI RLTYYHYAIS PDMDRKYNNL ITKRFGNNFP DVGTIERGID 240
  241 IIFVNSHDFL EQQRPMSPKI KYIGGMAIRK AKQLPDEFEK ILSVPKSAYV LFSFGTQVPT 300
  301 AKMPLPIRRN FVGAFKKFPN VTFLWKYDSL ELDADIFQGV ENIHRLEWLP QTELLHDNRV 360
  361 KLFISHMGLN SYLETATAGV PVLSIPLFAD QQNNAQNTRD RGMGLLLDRD KLTTKNIESA 420
  421 LHELLENPKY LSNARSISKM ILEKPDKAND TFIHWLEFTA RNPGLGRVLK LPGAELSPFY 480
  481 YYCGDILLLV FCILFIILHT VLRTINLPSR KIKSE

Type	Start	End	Confidence
Signal Peptide	1	16	0.54
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	478	0.91
Transmembrane Helix	479	502	0.89
Cytoplasmic	503	515	0.89