YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE13062
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNITNSSIGY PPPPLVGASF AKTAIPYSIC FVFGTLGNTA VLSYVFFITR SLKSSVTALG  60
   61 NTFIYIVALC AVDLLVTVSI PFSLSYMILN NWVFGELVCK IHFMLELSNK MCSTFILTAL 120
  121 AFDRYMAICH PEIKRIHEMR HTIYITTILA TLSLFLISPV VLSARVTSFK SGQYFVSAKN 180
  181 ERHEVIRQMC IDGMALEWKV WVSAFLIFFA FLLPCTLLTY FYAKIVLRLR RQRRTMLQSR 240
  241 IPLRRITIYT MAATFFYLSC HIPFWLPQIY NIFSTVLGHK MNPKVMTFTY YSHLLPFISA 300
  301 AFNWIFYARL NSQFKKGLVL VTERMIRKRT KSMHEKGYSE AAVELTSKFD DVPLMCPHCE 360
  361 AQLSIRSSSN GKKNSR

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.85
Transmembrane Helix	24	48	0.89
Cytoplasmic	49	61	0.76
Transmembrane Helix	62	84	0.89
Non-Cytoplasmic	85	106	0.69
Transmembrane Helix	107	122	0.78
Cytoplasmic	123	142	0.82
Transmembrane Helix	143	164	0.93
Non-Cytoplasmic	165	202	0.95
Transmembrane Helix	203	225	0.92
Cytoplasmic	226	245	0.91
Transmembrane Helix	246	265	0.97
Non-Cytoplasmic	266	286	0.92
Transmembrane Helix	287	307	0.92
Cytoplasmic	308	376	0.98