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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HIPK1_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQLQVFSP PSVSSSAFCS AKKLKIEPSG WDVSGQSSND KYYTHSKTLP ATQGQASSSH  60
   61 QVANFNIPAY DQGLLLQAPA VEHIVVTAAD SSGSAATATF QSSQTLTHRS NVSLLEPYQK 120
  121 CGLKRKSEEV DSNGSVQIIE EHPPLMLQNR TVVGAAATTT TVTTKSSSSS GEGDYQLVQH 180
  181 EILCSMTNSY EVLEFLGRGT FGQVAKCWKR STKEIVAIKI LKNHPSYARQ GQIEVSILSR 240
  241 LSSENADEYN FVRSYECFQH KNHTCLVFEM LEQNLYDFLK QNKFSPLPLK YIRPILQQVA 300
  301 TALMKLKSLG LIHADLKPEN IMLVDPVRQP YRVKVIDFGS ASHVSKAVCS TYLQSRYYRA 360
  361 PEIILGLPFC EAIDMWSLGC VIAELFLGWP LYPGASEYDQ IRYISQTQGL PAEYLLSAGT 420
  421 KTTRFFNRDP NLGYPLWRLK TPEEHELETG IKSKEARKYI FNCLDDMAQV NMSTDLEGTD 480
  481 MLAEKADRRE YIDLLKKMLT IDADKRVTPL KTLNHQFVTM THLLDFPHSN HVKSCFQNME 540
  541 ICKRRVHMYD TVSQIKSPFT THVAPSTSTN LTMSFSNQLS TVHNQASVLA SSSTAAAATL 600
  601 SLANSDVSLL NYQSALYPPS AAPVPGVAQQ GVSLQPGTTQ ICTQTDPFQQ TFIVCPPAFQ 660
  661 TGLQATTKHS GFPVRMDNAV PLVPQAPAAQ PLQIQSGVLT QGSCTPLMVA TLHPQVATIT 720
  721 PQYAVPFTLS CAAGRPALVE QTAAVQQAWP GGTQQILLPS AWQQLPGVAL HNSVQPTAVI 780
  781 PEAMGSSQQL ADWRNAHSHG NQYSTIMQQP SLLTNHVTLA TAQPLNVGVA HVVRQQQSSS 840
  841 LPSRKNKQSA PVSSTSSLEV LPSQVYSLVG SSPLRTTSSY NSLVPVQDQH QPIIIPDTPS 900
  901 PPVSVITIRS DTDEEEDNKF KPSSSSLKAR SNVISYVTVN DSPDSDSSLS SPYPTDTLSA 960
  961 LRGNSGTLLE GPGRTAADGI GTRTIIVPPL KTQLGDCTGA TQASGLLSSS KTKPVASVSG1020
 1021 QSSGCCITPT GYRAQRGGAS AVQPLNLSQN QQSSSASTSQ ERSSNPAPRR QQAFVAPLSQ1080
 1081 APYAFQHGSP LHSTGHPHLA PAPAHLPSQP HLYTYAAPTS AAALGSTSSI AHLFSPQGSS1140
 1141 RHAAAYTTHP STLVHQVPVS VGPSLLTSAS VAPAQYQHQF ATQSYIGSSR GSTIYTGYPL1200
 1201 SPTKISQYSY L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle