YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE12962
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGVSFLLVL SSAMFFGSYM AGSIPLMFSL SESRIRLVSI FGAGLLVGTA LSVIIPEGIE  60
   61 ALYGAQCGAV HQHNHHDHIN PVVSPEGAIV NPAEAKQILE NAKDKEDNLP RIIPKNAVLN 120
  121 EAIGRVVRSP PASPDTPSRK KRDVLVETHS NNEHDEKEHE EKQHSHGNIH AQIGYSLVLG 180
  181 FVLMLLVDQI GSVTVARNDR AGRSRIGISA TIGLVVHAAA DGVALGSASV INKSDVQIIV 240
  241 FVAIMLHKAP AAFGLVSFLL MESIDRRAIR KHLVVFSAAA PLAALVTFVL IMQMGESMRS 300
  301 ESSTGVLMLF SAGTFLYVAT VHVLPELANN KQTEYSLVVD ATAPSSIGHS HSSGASYTIK 360
  361 ELLLIIGGAV VPAILASGHS H

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.85
Transmembrane Helix	7	28	0.92
Cytoplasmic	29	36	0.79
Transmembrane Helix	37	56	0.93
Non-Cytoplasmic	57	172	0.95
Transmembrane Helix	173	193	0.88
Cytoplasmic	194	205	0.82
Transmembrane Helix	206	228	0.86
Non-Cytoplasmic	229	237	0.81
Transmembrane Helix	238	261	0.91
Cytoplasmic	262	271	0.92
Transmembrane Helix	272	292	0.95
Non-Cytoplasmic	293	303	0.78
Transmembrane Helix	304	324	0.89
Cytoplasmic	325	356	0.92
Transmembrane Helix	357	378	0.77
Non-Cytoplasmic	379	381	0.66