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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CNNM4_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGGGGGRR DGWPARGRLL LAALLLLLWT RAASGQSSPQ QSVILGMRLA SCNKSCGMNP  60
   61 DGIIFVSEGS TVNLRLYGHR LGEISSNLIS FTEVDDAETV HNSTNCLELT KDLVVQRLVN 120
  121 VSRGNTSGML VVITKFLRRS ENMKLYALCT RTRADGPWLK WTDKDSLLFM VEEHGRFLPL 180
  181 WLHILLVLVL LVLSGIFSGL NLGLMALDPM ELRIVQNCGT EKERRYARKI EPIRRKGNYL 240
  241 LCSLLLGNVL VNTSLTILLD NLIGSGIMAV ASSTIGIVIF GEILPQALCS RHGLAVGANT 300
  301 IVLTKIFMLL TFPLSFPISK LLDFVLGQEI RTVYNREKLM EMLKVTEPYN DLVKEELNMI 360
  361 QGALELRTKT VEDIMTQLHD CFMIRSDAIL DFNTMSEIME SGYTRIPVFE DEQSNIVDIL 420
  421 YVKDLAFVDP DDCTPLKTIT RFYNHPVHFV FHDTKLDAML EEFKKGKSHL AIVQKVNNEG 480
  481 EGDPFYEVLG LVTLEDVIEE IIKSEILDES DTYTDNRTRK RVSMKNKRDF SAFKDADNEL 540
  541 KVKISPQLLL AAHRFLATEV PQFSPSLMSE KILLRLLKYP DVIQELRFDE HNKHCTRHYL 600
  601 YTRNKPADCF ILILQGKVEV EAGKENMKFE TGAFSYYGTM ALSLAPPDRS PAHPTPLSRS 660
  661 ASLSYPDRNT DMTPSSLAGS NQFGSCILGQ YVSDFSVRAL TDLQYIKVTR QQYQNGLLAS 720
  721 RMDNSPQLTL DGCATCTENL SERPELPVVD ETTTLLNERN LLLHRASQEG TI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle