YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CMLO5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALYQIRQYQ ERDHKHVVDL FSSGIKEHIP AAFRYTLLLP KTLLFLFAAP LTIVLASGSW  60
   61 LLAVVCIFFL LLLLRFLAGQ PFKEYVAMCL QTDMADITKS YLNSHGSFWV AESGGQVVGI 120
  121 VAALPVKESP SGRKQLQLFH LSVSSQCRGQ GIAKALVRTV LQFARDQGYT DVVLETSIIQ 180
  181 QGAMTLYEAM GFQRTGKNLE NSIIKWLIGF FFISFHVCFP FCSGT

Type	Start	End	Confidence
Cytoplasmic	1	31	0.81
Transmembrane Helix	32	54	0.66
Non-Cytoplasmic	55	57	0.47
Transmembrane Helix	58	78	0.86
Cytoplasmic	79	202	0.88
Transmembrane Helix	203	223	0.88
Non-Cytoplasmic	224	225	0.80