YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YKR005C
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLECLSALLV LFAGGGGSVL AAVQSKTVAD PNLCPGYNSQ LISPFLSSCK RNLSECVSRY  60
   61 FDEQYAFCRS CVTVNNETME DLDNCKCLQC ALSSLNNSCF HDYCTSKDEY DKLQIVVEQF 120
  121 QLTNGVLDDG EILKPRGNKF SSRKLSYFVG QNNTLFRNPL QFEKNQLISA LLTSLTNNQK 180
  181 TISSVDMFEV VDANNEVQYL RERTISGKTL SPATGYEEEN DGDCSVKDKK WEGKIEYHEN 240
  241 KKVSSENCSK DTDDKSGSKK ERNTKAPLFH TATEIHMTRW SSWRPKKIFT RYLVNEYQSP 300
  301 KIITTVNRFY RTKTDTETGT TLITSTKAKR RWFPRTKIVT STATSTFLSI TTTTTTNAIA 360
  361 TKSLVAVLNP DGLNKKAGIN FGLFSANGEL ASPDEGGTPT VVRRDKISDP GAANEQATLF 420
  421 STTFSQVPHL PELDSGEFIS AASQLDKRIF IFTAITVSIT TLMMLGFSYR SRVSFRDHSI 480
  481 DDSDDDNDWS DDEVEFDEEY FYSLPVSIPE KGISLDKMAQ QLGVE

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	448	0.99
Transmembrane Helix	449	469	0.89
Cytoplasmic	470	525	0.92