YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25336545
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNSCRFTYF DSPEFLTLAF HTTSLIETPI HCLGFYCILW KTPEQMKSVK WYMFTLHTWI  60
   61 LLFDYSLSLL TAPFVLVNEG AGYPLGLSKY TNVPEVFQFM IVIDFATNMA ISIDSIFENR 120
  121 FYIICTFSWK HHWKFWRRVW LAAHYILLIV LLSVIPFLVP DQNIAVKKLF QNIPCLPKHF 180
  181 LEAPIFVVAD DKTYHMIAAV FHIALICFEV FLFVVFLIRN SAKQLKEKTM SQKTFELQKR 240
  241 FFIALVIQIS IPLACFIFPL AFAAFSVIIG YSNQAVTNVL VVTIASHGIV STIAMLLLHK 300
  301 PYRNAVKEIW NRPFGKSADV SQNQGRNLFI APRKIKISSE LAILRKLKFS ANPQIGNLPK 360
  361 IKILGKTANW QFAKNNKNFC DFFPLKMTEY NINIPNMTIK KFQKML

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.80
Transmembrane Helix	18	40	0.78
Cytoplasmic	41	54	0.89
Transmembrane Helix	55	77	0.87
Non-Cytoplasmic	78	95	0.93
Transmembrane Helix	96	117	0.85
Cytoplasmic	118	137	0.85
Transmembrane Helix	138	159	0.91
Non-Cytoplasmic	160	197	0.95
Transmembrane Helix	198	220	0.92
Cytoplasmic	221	240	0.95
Transmembrane Helix	241	265	0.91
Non-Cytoplasmic	266	278	0.73
Transmembrane Helix	279	298	0.94
Cytoplasmic	299	406	0.98