YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE12288
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPIPPPTFV GRIAFHLKSD DDFRTAIDAF MASFAVVATV SASTSSFVFG ILASLLTILI  60
   61 AYLFARKRVF TNKSILMPAA LLGCAVAVSL AYSVSHEGEV LEHLSHYFLF LSMFHFTEFV 120
  121 FTALTNRRTL RPDSFLLNHS VGYWLAASIS WIEFLIEAYF FPEIKMRGIL WIGTLGCIIG 180
  181 EIFRKVGMVH AGLAFTHRLA MTKRSDHRLV KDGIYAYLRH PGYFGWFLWA VSTQIILCNP 240
  241 ICCVVYAYVT WHFFASRIYD EEKDLISFFG DSYVEYQQNV WCGVPFVRGY QRP

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.57
Transmembrane Helix	32	65	0.78
Cytoplasmic	66	73	0.88
Transmembrane Helix	74	95	0.92
Non-Cytoplasmic	96	103	0.87
Transmembrane Helix	104	125	0.88
Cytoplasmic	126	139	0.75
Transmembrane Helix	140	161	0.78
Non-Cytoplasmic	162	167	0.76
Transmembrane Helix	168	188	0.68
Cytoplasmic	189	225	0.57
Transmembrane Helix	226	249	0.86
Non-Cytoplasmic	250	293	0.54