YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE12232
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLLVLLTI ASVALAAVDD VAVNNFKVGI LAKDQQPSDE NLKTVALFSK LPNELKADAS  60
   61 QRLYVSFTVA KKSDNAKVKP HQVFLRFVAQ NGEDVVVVVN PDANGNYVYD NVLRTAAKSF 120
  121 RNLSGQFKIS LLVGDVTIKN PINWQFANID AALPVAYEPT PKSQQVHFEP LNEISHIFRQ 180
  181 PEKRPSALIS DLFTIICLSP LLILVVLWSQ VGINFQNAPA SPWVPIFHVG LIGIFGIYFM 240
  241 FWVQFDMFVT LKYLAVLGFL TFVAGNRVLR AISESKQKSE

Type	Start	End	Confidence
Signal Peptide	1	16	0.99
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	186	0.99
Transmembrane Helix	187	209	0.90
Cytoplasmic	210	222	0.78
Transmembrane Helix	223	242	0.95
Non-Cytoplasmic	243	248	0.85
Transmembrane Helix	249	269	0.92
Cytoplasmic	270	280	0.93