YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lips-4
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCDPIKSKA DAVLFNHSIM LFSLFAFLVI SCQAASGVNG PLTTDFQNWL KINGYDSYDF  60
   61 VRSDYGVKGS YGGFTKTITK ASKTPVIFIH GNSDSALKTS SMATGWDNTI SYFSTQGFTS 120
  121 AELYATSWQD TNSLKAETRT HDCKDLTRLR KFFEAVLAYT GYAKVSVISH SMGVTLGRKV 180
  181 IQGGIVNGTD GNCNLGVSIS GKVDVFVGIA GANYGLCGCA GTVGLFAPTC NKKNGFWPGD 240
  241 SCGGYTSSFC GYSSTPCNGI SKYSNLLNDM NNSNKKEASY IFSTWSKADD LIGNSDIVWG 300
  301 RPTSLIPLSD GKIIYEKLTH MQSKENTAID QYKMVTSKKV

Type	Start	End	Confidence
Signal Peptide	1	34	0.92
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	340	0.98