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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CE11982
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTANGNANPA FRRQASTAGV NPVLTVALTP VPKVDYSVTK GGARTWIVLL VFIFLCSSLY  60
   61 TIFSAKDAGD SHHDLSSHSS ADDDDVPAYN HPGSATEDDD DDDDDDEPPT PSPRVSKKQE 120
  121 QQTTQQKTTQ PAAAQVTDSD DEDDEESNEH TLGGRLFAGL RKKITDRLNE KAVKEEPKSK 180
  181 NDQILNPREL RKLKKQQKTA KVEVVEDDDD DDDEDDDDVE APAPQEPSRK QKAHNQREEK 240
  241 KDKNKKYQPV KEEPDLDDDD DDEDDDDDDG DDDDDEKDDG NDAEKDDGDD DDDDDDGNDD 300
  301 DEEDGKNKKT SVEAKSDKVV EEKNDGDDEP HVSHREAQRL RRQHLRESRR DNRPRQGGNR 360
  361 ECIHQDCPNR ESLKPRKSLL VTKKKTKSMV ERILDDEFDD EDDDDEDDDS EVNKNDREDD 420
  421 DEDDVDERIS DRDSSSSYKR HAITTKEEIG FRDILDRADN LVEKHQYEEA MELFDHVIAV 480
  481 YPASTRAYFG KARAYDIRGE IEADETDRDK AIEIYEKILQ NSGVPDALFR QAAQRLIEKT 540
  541 RFRGQLHKTL TAHRYFIDRF PEELNLQTDF AISFVMMKRY EDARTVLKNV LANDPNHVIA 600
  601 LAYYGYILKA HDDKVEQGVA LMRKSLKNAD NEITDPKFYY QLGHGLTTLG RKSEADAVYQ 660
  661 KAAQMGVFMT AQQRSLYNIE GLTGRAWWAM DQTPYSKFLK TVERQWATIR QEGMEVLKDC 720
  721 SDCWLDHNQQ LVIDGQWKFF PIMSEQNFIK SSCERMPQTC LILQEFAASS NASKSDMHLS 780
  781 VLSSGASILP HCGPTNYHLQ AHLGLVSPSE ARIRVGNETK GWRSGKFIIY DDSFEHELQF 840
  841 DGASSSSFRL VLTIQLWHPE VQPHQRVLSF LS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle